chore: strip pre-fork version comments across 72 files

Removes standalone "// v0.X.X:" comment lines and inline trailing
version annotations. Keeps version references in config field docs
and compatibility notes where they describe requirements.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

server/sandbox/settings_module.go

@@ -1,6 +1,6 @@
 package sandbox
 
-// settings_module.go — v0.2.0
+// settings_module.go
 //
 // The settings module lets extensions read their resolved settings via
 // the three-tier cascade: global → team → user, respecting the